PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030309.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 324aa    MW: 35638.2 Da    PI: 8.5242
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030309.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.53.7e-3469123558
  ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  +YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e
  CCG030309.1  69 TYKECLKNHAATIGGHALDGCGEFMPSPTAThTDPTSLKCAACGCHRNFHRREPE 123
                  7***************************9999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-2869122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2269121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-3169121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.94470121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.6E-29196267IPR009057Homeodomain-like
SuperFamilySSF466897.43E-18197266IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-25205262IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDITPATATA TTTTNNNTNT TIPKSPEADT GTPTRIPQTK PSSFTNGVLK RHHPHHHHNH  60
FSQPPVIKTY KECLKNHAAT IGGHALDGCG EFMPSPTATH TDPTSLKCAA CGCHRNFHRR  120
EPEDPPPHTT AITTIEYQPH HRHHPPPPLA QPQHNRSPNS ASPPPISSSY YPSAPHMLLA  180
LSGGVSGLNE NVNINAPPRA GSSPRKRFRT KFSQGQKERM HQFAEKVGWK MQKGDEDLVQ  240
EFCNEVGVDR SALKVWMHNN KNSFGKKEHL NGNNDDVIRS SNLENSCSNN ESNKDITNNN  300
NNHHHFENDS HAAHVGTNGS SSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-202062631875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2272360.0CU227236.1 Populus EST from severe drought-stressed leaves.
GenBankCU2288270.0CU228827.1 Populus EST from severe drought-stressed leaves.
GenBankCU2290160.0CU229016.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010943.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG08e-77ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLB9H0F61e-165B9H0F6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12500.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.17e-68homeobox protein 34